rs27068740 SNP Detail

Summary

• ID
  rs27068740
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3426066 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTCCTCC CTCTCCCTCC
  CTCCCTCGCT CCCTTTAACC CCCCCCCCCC CACACACACA CAAATGTTTC TCACACTATA
  CTCTTGGGTG TGTGTGTGTG TGTGTGTGTG TGTGTACAAC CAGTCGATAA GCTTGGCCAA
  GTGTCCCCCA TTTTTCTTCT TTATTATTTA CTTATTTTAG GTTGTGGGGC AGAGCTTCAC
  R
  TATCCTAGGT GGAGTCATAT CAGCCCACCC AGGTTCTCAT ACTCGCACTT GATCTTCCTG
  CGTATGTCCC CTGACCCAGG TGGGACTTGA ATAGCTTTCA TCAGCTCAGG GTCTAACCCT
  TTTTAGTGGT TCCTGTTCCC TACTCTGAAA GGTTCGTCAT GTGCAGAAGA GCCAAAGGCC
  TGTGGGAATC TATTTGCTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37328563	NES08832326	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27068740					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37328563	NES08832326	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3426066 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11152	CpG island 11152	615 bp distal
Dclre1c	DNA cross-link repair 1C	within coordinates
Rr367090	regulatory region 367090	874 bp downstream
Rr550902	regulatory region 550902	854 bp distal
Rr550903	regulatory region 550903	561 bp distal
Tssr15890	transcription start site region 15890	822 bp downstream
Tssr22367	transcription start site region 22367	1005 bp upstream