rs27068742 SNP Detail

Summary

• ID
  rs27068742
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3425215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGCC CAGGGTCAGT GTGTGCTTCT
  S
  TTTCCGAGGT GGGCTTTGGG TCTAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37328565	NES08832323	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27068742					SNP	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37328565	NES08832323	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3425215 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11152	CpG island 11152	within coordinates
Dclre1c	DNA cross-link repair 1C	within coordinates
Meig1	meiosis expressed gene 1	1530 bp upstream
Rr367090	regulatory region 367090	23 bp downstream
Rr550902	regulatory region 550902	3 bp distal
Rr550903	regulatory region 550903	269 bp proximal
Tssr15890	transcription start site region 15890	within coordinates
Tssr22364	transcription start site region 22364	1605 bp upstream
Tssr22365	transcription start site region 22365	1578 bp upstream
Tssr22366	transcription start site region 22366	1545 bp upstream
Tssr22367	transcription start site region 22367	154 bp upstream