rs27068744 SNP Detail

Summary

• ID
  rs27068744
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3425016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGATCTGAG GAAATGCAAG
  GCAATATGGT TAAGAAAAGG GAAGCTCTCT GGCCTCCATT CTCAGTTGTG TTTCGTTTCC
  TGCCTTGGTT CCTCCACAGA TGCGGGCAGA TCTGCATTGC GCAACAAACA CTTCGGTGTC
  TTTTCTTGCT TTCTGGCAGG AACGTGACTT TCCATGACCA GCCAGTGCTA CCCACAAACT
  W
  CGCACAGCTG TTTCTCCGTG CCCAGCTGGT GCAGTTATTT AAACCAAGGG ACTTGGGAGG
  CTGGATCAGG ATTGGATGCC CATTGGCTCC GCCCCTACCT CAAGGGTCCT TTGATTGGAT
  GTGGCTGAGC TCTGCCGGCC TATGGGTAGG CGGTGCGCAG GTTCCCGGAA GTGGCGCCCA
  GGGTCAGTGT GTGCTTCTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37328567	NES08832321	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	A	A	A	A	T		A	A	A	A		A
ss320204511	CHEV_2_3341251	CHEVERUD	SCREENING_POP	f	SNP										A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27068744					SNP	T	A	A	A	A	A	A	A	T	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37328567	NES08832321	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3425016 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11152	CpG island 11152	62 bp proximal
Dclre1c	DNA cross-link repair 1C	152 bp upstream
Meig1	meiosis expressed gene 1	1331 bp upstream
Rr367090	regulatory region 367090	within coordinates
Rr550902	regulatory region 550902	within coordinates
Rr550903	regulatory region 550903	468 bp proximal
Tssr15890	transcription start site region 15890	144 bp upstream
Tssr22364	transcription start site region 22364	1406 bp upstream
Tssr22365	transcription start site region 22365	1379 bp upstream
Tssr22366	transcription start site region 22366	1346 bp upstream
Tssr22367	transcription start site region 22367	8 bp downstream