rs27068745 SNP Detail

Summary

• ID
  rs27068745
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3424808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCCCCCCA CCCCTGCTCT
  AAGAATCTAT GTCTGAATTG TAGCCTTCAA AATATAGTTA GCTTATATAA TACAGAAGAG
  GGAGCAACTA CCAATGGAAT CTACTAACCA AGAGTCAGAG GCAATGACTC ATCCAATCCT
  CGTGGTTACC CTATAAAATA CAAATTGGGA TAAGATTTTT AAAAAAGTGA AAAGAACTCG
  R
  TCTTCACTAG ATCTGAGGAA ATGCAAGGCA ATATGGTTAA GAAAAGGGAA GCTCTCTGGC
  CTCCATTCTC AGTTGTGTTT CGTTTCCTGC CTTGGTTCCT CCACAGATGC GGGCAGATCT
  GCATTGCGCA ACAAACACTT CGGTGTCTTT TCTTGCTTTC TGGCAGGAAC GTGACTTTCC
  ATGACCAGCC AGTGCTACCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37328568	NES08832320	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27068745					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37328568	NES08832320	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3424808 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11152	CpG island 11152	270 bp proximal
Dclre1c	DNA cross-link repair 1C	360 bp upstream
Meig1	meiosis expressed gene 1	1123 bp upstream
Rr367090	regulatory region 367090	19 bp upstream
Rr550902	regulatory region 550902	within coordinates
Rr550903	regulatory region 550903	676 bp proximal
Tssr15890	transcription start site region 15890	352 bp upstream
Tssr22364	transcription start site region 22364	1198 bp upstream
Tssr22365	transcription start site region 22365	1171 bp upstream
Tssr22366	transcription start site region 22366	1138 bp upstream
Tssr22367	transcription start site region 22367	216 bp downstream