rs27068746 SNP Detail

Summary

• ID
  rs27068746
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3424578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGTTTGG AGGTTCCAGT
  TGATCAACAG TGCTGAGTAT CTGAGGAGAA CTTGCTAGGA AGGAGAAAAT AAATGCCACT
  GACAAAGTCT TTGGTGGATC TTAGTATGAT TACTACACAC TTTCCCACCC TGCCCCCCAT
  CCTCTCCCTC TGTCTCTTTA TATATCCTTC TGACTTCCTC AAAGTACAAC TTAAATGATT
  R
  CTGGAGGCCA GCAGATCAAT GGAATCTTTA CTCCCCCCAC CCCTGCTCTA AGAATCTATG
  TCTGAATTGT AGCCTTCAAA ATATAGTTAG CTTATATAAT ACAGAAGAGG GAGCAACTAC
  CAATGGAATC TACTAACCAA GAGTCAGAGG CAATGACTCA TCCAATCCTC GTGGTTACCC
  TATAAAATAC AAATTGGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37328569	NES08832319	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27068746					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37328569	NES08832319	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3424578 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11152	CpG island 11152	500 bp proximal
Dclre1c	DNA cross-link repair 1C	590 bp upstream
Meig1	meiosis expressed gene 1	893 bp upstream
Rr367090	regulatory region 367090	249 bp upstream
Rr550902	regulatory region 550902	100 bp proximal
Rr550903	regulatory region 550903	906 bp proximal
Tssr15890	transcription start site region 15890	582 bp upstream
Tssr22364	transcription start site region 22364	968 bp upstream
Tssr22365	transcription start site region 22365	941 bp upstream
Tssr22366	transcription start site region 22366	908 bp upstream
Tssr22367	transcription start site region 22367	446 bp downstream