rs27068747 SNP Detail

Summary

• ID
  rs27068747
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3424471 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAATCTCC CCACAGTACT
  AAAACCAGTC GCTCAGTTTT TGCAGACACT GCTTCTTTTC AGTTTTCCTG TTTACCTCCA
  CAAGGCTTGC CAAAGTGTTC TGCATAGCAG GGTTTGGAGG TTCCAGTTGA TCAACAGTGC
  TGAGTATCTG AGGAGAACTT GCTAGGAAGG AGAAAATAAA TGCCACTGAC AAAGTCTTTG
  S
  TGGATCTTAG TATGATTACT ACACACTTTC CCACCCTGCC CCCCATCCTC TCCCTCTGTC
  TCTTTATATA TCCTTCTGAC TTCCTCAAAG TACAACTTAA ATGATTACTG GAGGCCAGCA
  GATCAATGGA ATCTTTACTC CCCCCACCCC TGCTCTAAGA ATCTATGTCT GAATTGTAGC
  CTTCAAAATA TAGTTAGCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37328570	NES08832318	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27068747					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37328570	NES08832318	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3424471 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11152	CpG island 11152	607 bp proximal
Dclre1c	DNA cross-link repair 1C	697 bp upstream
Meig1	meiosis expressed gene 1	786 bp upstream
Rr367090	regulatory region 367090	356 bp upstream
Rr550902	regulatory region 550902	207 bp proximal
Rr550903	regulatory region 550903	1013 bp proximal
Tssr15890	transcription start site region 15890	689 bp upstream
Tssr22364	transcription start site region 22364	861 bp upstream
Tssr22365	transcription start site region 22365	834 bp upstream
Tssr22366	transcription start site region 22366	801 bp upstream
Tssr22367	transcription start site region 22367	553 bp downstream