rs27068751 SNP Detail

Summary

• ID
  rs27068751
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3423652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATTCTGT CGACGACCAG
  ACTCAGTGCA GAATGTATTG TCCTGTAGAG ACAACCCATC CACAGCAATT GTCCTCCGGT
  AGTCTAGGAA AGACCATCTT ATACAAAACC AAGGCTTTAC CGGTACTACT GTGTGGAATG
  TATAAGTTGG TGTGTATATC CAGAACACTT CCCTCTACTT CCCTGCTTCC TCCTTATGAA
  W
  ATCTGAATGT GAATAGAACC AGGTATTATG ACTGCAAGAG TAACCAGATG TTCTCTGACC
  CTGGCATTCC GACCCCTCTG CTCAGAGCTT ACTCCTGGCA TCATCCCATG ATCACTTCTG
  CCTCTGTGAA AATATTCTTG TCATATTCTT CATTTTTGTG GCTTTTCAAA TGTGCTGAAC
  TCGGATGGCA CATCAGAGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37328574	NES08832377	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	T	A		T	T	T		T
ss320204510	CHEV_2_3339887	CHEVERUD	SCREENING_POP	f	SNP								T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27068751					SNP	A	T	T	T	T	T	A	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37328574	NES08832377	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3423652 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11152	CpG island 11152	1426 bp proximal
Dclre1c	DNA cross-link repair 1C	1516 bp upstream
Meig1	meiosis expressed gene 1	within coordinates
Rr367090	regulatory region 367090	1175 bp upstream
Rr550902	regulatory region 550902	1026 bp proximal
Rr550903	regulatory region 550903	1832 bp proximal
Tssr15890	transcription start site region 15890	1508 bp upstream
Tssr22364	transcription start site region 22364	42 bp upstream
Tssr22365	transcription start site region 22365	15 bp upstream
Tssr22366	transcription start site region 22366	within coordinates
Tssr22367	transcription start site region 22367	1372 bp downstream