rs27068753 SNP Detail

Summary

• ID
  rs27068753
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3423573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTAACGAGA AAAGCAACGA
  ACAAGTAAGT AAGAGTGAAT TTTAGTTTGC CTTGCCTCTC AAGGAGCTCC AACTTCTGAG
  AAATTCTGTC GACGACCAGA CTCAGTGCAG AATGTATTGT CCTGTAGAGA CAACCCATCC
  ACAGCAATTG TCCTCCGGTA GTCTAGGAAA GACCATCTTA TACAAAACCA AGGCTTTACC
  R
  GTACTACTGT GTGGAATGTA TAAGTTGGTG TGTATATCCA GAACACTTCC CTCTACTTCC
  CTGCTTCCTC CTTATGAATA TCTGAATGTG AATAGAACCA GGTATTATGA CTGCAAGAGT
  AACCAGATGT TCTCTGACCC TGGCATTCCG ACCCCTCTGC TCAGAGCTTA CTCCTGGCAT
  CATCCCATGA TCACTTCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37328576	NES08832375	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	G	G		A	G	G	A		G	G	G	A		G
ss45316389	mCV23104888	ABI	CRAMUS_MOUSE	f	SNP	A	G					G
ss146261811	ENSMUSSNP1794697	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320204509	CHEV_2_3339808	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27068753					SNP	A	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37328576	NES08832375	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3423573 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11152	CpG island 11152	1505 bp proximal
Dclre1c	DNA cross-link repair 1C	1595 bp upstream
Meig1	meiosis expressed gene 1	within coordinates
Rr367090	regulatory region 367090	1254 bp upstream
Rr550901	regulatory region 550901	1966 bp distal
Rr550902	regulatory region 550902	1105 bp proximal
Rr550903	regulatory region 550903	1911 bp proximal
Tssr15890	transcription start site region 15890	1587 bp upstream
Tssr22364	transcription start site region 22364	25 bp downstream
Tssr22365	transcription start site region 22365	40 bp downstream
Tssr22366	transcription start site region 22366	72 bp downstream
Tssr22367	transcription start site region 22367	1451 bp downstream