rs27068756 SNP Detail

Summary

• ID
  rs27068756
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3423413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTGCATG CCTGTTTTAT
  ATACTTATGT GTCCAGTGTT GTGTAAAACT TCTCAAAGGA AAGGGGTCTC GAACGGAAAA
  AGTTCAGTCA TAAGAATATA AGCATGCATG TTGCTTACAG TGACAACTTG ATTCTCACAA
  CTGTTTCCTA CTGTGTACGT CGTAACGAGA AAAGCAACGA ACAAGTAAGT AAGAGTGAAT
  Y
  TTAGTTTGCC TTGCCTCTCA AGGAGCTCCA ACTTCTGAGA AATTCTGTCG ACGACCAGAC
  TCAGTGCAGA ATGTATTGTC CTGTAGAGAC AACCCATCCA CAGCAATTGT CCTCCGGTAG
  TCTAGGAAAG ACCATCTTAT ACAAAACCAA GGCTTTACCG GTACTACTGT GTGGAATGTA
  TAAGTTGGTG TGTATATCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37328579	NES08832372	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	T		C	T	T		T	T	T	C		T
ss45277738	mCV23104889	ABI	CRAMUS_MOUSE	f	SNP	C	T					T		T
ss146261806	ENSMUSSNP6220435	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss320204508	CHEV_2_3339648	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27068756					SNP	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37328579	NES08832372	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3423413 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11152	CpG island 11152	1665 bp proximal
Dclre1c	DNA cross-link repair 1C	1755 bp upstream
Meig1	meiosis expressed gene 1	within coordinates
Rr367090	regulatory region 367090	1414 bp upstream
Rr550901	regulatory region 550901	1806 bp distal
Rr550902	regulatory region 550902	1265 bp proximal
Tssr15890	transcription start site region 15890	1747 bp upstream
Tssr22364	transcription start site region 22364	185 bp downstream
Tssr22365	transcription start site region 22365	200 bp downstream
Tssr22366	transcription start site region 22366	232 bp downstream
Tssr22367	transcription start site region 22367	1611 bp downstream