rs27068757 SNP Detail

Summary

• ID
  rs27068757
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:3423362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGACTTGTT TTCAAATAGA
  TCTCTTTAGG ACTTATTACC AGCAAACTTT TTATTTGCAT GCCTGTTTTA TATACTTATG
  TGTCCAGTGT TGTGTAAAAC TTCTCAAAGG AAAGGGGTCT CGAACGGAAA AAGTTCAGTC
  ATAAGAATAT AAGCATGCAT GTTGCTTACA GTGACAACTT GATTCTCACA ACTGTTTCCT
  M
  CTGTGTACGT CGTAACGAGA AAAGCAACGA ACAAGTAAGT AAGAGTGAAT TTTAGTTTGC
  CTTGCCTCTC AAGGAGCTCC AACTTCTGAG AAATTCTGTC GACGACCAGA CTCAGTGCAG
  AATGTATTGT CCTGTAGAGA CAACCCATCC ACAGCAATTG TCCTCCGGTA GTCTAGGAAA
  GACCATCTTA TACAAAACCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37328580	NES08832371	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27068757					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37328580	NES08832371	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3423362 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11152	CpG island 11152	1716 bp proximal
Dclre1c	DNA cross-link repair 1C	1806 bp upstream
Meig1	meiosis expressed gene 1	within coordinates
Rr367090	regulatory region 367090	1465 bp upstream
Rr550901	regulatory region 550901	1755 bp distal
Rr550902	regulatory region 550902	1316 bp proximal
Tssr15890	transcription start site region 15890	1798 bp upstream
Tssr22364	transcription start site region 22364	236 bp downstream
Tssr22365	transcription start site region 22365	251 bp downstream
Tssr22366	transcription start site region 22366	283 bp downstream
Tssr22367	transcription start site region 22367	1662 bp downstream