rs27070338 SNP Detail

Summary

• ID
  rs27070338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:12012408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATCACACA CAGGTGAGTA
  ATCTGTGTTA CACCGGGAGA GACCGGCCAA GGCTCGTTTT ATGGCTGAAG ACATAAAGCT
  ATATCCAAAT GTCCCATTTT CAATCTTTTT CAGCTACACA CTTGACATGA ATAGCAGCAA
  CATCTCTTAG AATGGAGGTG AGCAACACAC ACACACACAT ACCACACTCC AGTGCTCATT
  Y
  GACTTGTGGG TCAGCCACCA GAGGGTGATA TGAACTGTCC TGTCCTCTGA CCAGAGGAAA
  GGAACTGACT TTTCACTGAG GTTACGGCCA GGTGGGAGGC CTCACTCCCT TGACTCTCGG
  GCCTGGCCTT ACCTCTCACC TTCATTTTTT CTGCTCTGTG CTTTCCCCAG CGAGTCCTCG
  CTGGTCTCCT AAGTTCTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	WSB/EiJ
ss37335660	NES08808811	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	WSB/EiJ
rs27070338					SNP	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37335660	NES08808811	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:12012408 () rs orientation: forward

Symbol	Name	Function Class
Rr551866	regulatory region 551866	11 bp proximal