rs27072636 SNP Detail

Summary

• ID
  rs27072636
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99944634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACTGAGA TCTTCATGGA
  CCCTCAAACC TGCCTTTCTT TATCTGGTTT GATTTAATTC AAAAATACAT TCACTAGGCT
  TTAGAACAGA ACCAAGTTGA AACAGAAGAA TCAAAGATGA TAAGACATTC CCAGTTTATG
  GATAAGTCAG GCCAATCAGC CCTAATTTGG TCCAAAAAGT AAACAAGAAA AATACAGACA
  R
  AAGTGAGGAA ATGAGGTATT TTAAAGGTAG AAGATGATAC TTGGAAATAT ATTTGTACTT
  AATATTGTTT TAAAATTGCA CATATGATAT TAAGGGCAGC AGACATTTTA TGACCATGCA
  CTGTGTGTCT AGCATAATCC TAGGTGCAGG GTCATGGTAG GTGTGGAGTT GGATGCATCC
  TTGTCCCTCC TGGAGCTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37285858	NES08555696	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	A	A	A	A		G	G	A	G		G
ss132717854	ENSMUSSNP2936708	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					A
ss323830640	CHEV_11_99915122	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27072636					SNP	A	A	G	G	G	A	A	A	A	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37285858	NES08555696	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99944634 () rs orientation: forward

Symbol	Name	Function Class
Gm11571	predicted gene 11571	within coordinates
Tssr104894	transcription start site region 104894	1693 bp downstream
Tssr104895	transcription start site region 104895	1543 bp downstream
Tssr104896	transcription start site region 104896	1516 bp downstream