rs27072638 SNP Detail

Summary

• ID
  rs27072638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99944274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATTCACTG GCTTTAGGTG
  TTGGGCAAAC ATCAGTCACA TTGAAGATGT AGGAGGACTG GTCACCTCTG TCGCCTGCAA
  CCTACTCCAG GAGATATCTG GTTTCCCCGC TGACTGTCCT GCAGAAGGTG ACATGGAACA
  ATTCATCAGG ATGGAGCGTT CAGGCAGACT GGCTGGTGAG TAAGCACAAA GCTGACATCC
  Y
  GTGTCTCTTG CACTGTATCA ACTAGCTGGA GTAGATTTGC CTCTTGAAAA AATAAGAGAA
  ATGAGGCCCC AGGCATAACC ATGCCCTGTG ATTTACTCAG GCTAGCAGTA GACTTAAGTG
  ATTTCTTGGA CTACTTGCAT GCTTTAATCC CCCTAAGAAG AAACTGAGAT CTTCATGGAC
  CCTCAAACCT GCCTTTCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37285860	NES08555694	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	C	C	C	C	C		T	T	C	T		T
ss132717838	ENSMUSSNP446295	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
ss323830634	CHEV_11_99914762	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27072638					SNP	C	C	T	T	T	C	C	C	C	C	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37285860	NES08555694	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99944274 () rs orientation: forward

Symbol	Name	Function Class
Gm11571	predicted gene 11571	within coordinates
Tssr104894	transcription start site region 104894	1333 bp downstream
Tssr104895	transcription start site region 104895	1183 bp downstream
Tssr104896	transcription start site region 104896	1156 bp downstream