rs27072641 SNP Detail

Summary

• ID
  rs27072641
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99944080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTAGCTG AAACGCACTG
  TTGTTTGCCT CCAGACGATG TAAACTCCAA GAGCAGCAAT GCCATTTGTT CCTGACCAAG
  TATGGAGAAC CTGGAGATGA GATAGGGAAG GAGTGGGGAC AGTCAACCAT AAAATGCCAT
  CTGTTTCTGA TGGAGTACAG GGGGATAAAA GAGAGGAAGA GCAAGAATAT TCAGGCATTC
  M
  CTGGCTTTAG GTGTTGGGCA AACATCAGTC ACATTGAAGA TGTAGGAGGA CTGGTCACCT
  CTGTCGCCTG CAACCTACTC CAGGAGATAT CTGGTTTCCC CGCTGACTGT CCTGCAGAAG
  GTGACATGGA ACAATTCATC AGGATGGAGC GTTCAGGCAG ACTGGCTGGT GAGTAAGCAC
  AAAGCTGACA TCCCGTGTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37285863	NES08555691	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	A	A	A	A	A	A		A	C	A	C		C
ss132717830	ENSMUSSNP4798644	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C					A
ss323830632	CHEV_11_99914568	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27072641					SNP	A	A	C	C	A	A	A	A	A	A	C	A	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37285863	NES08555691	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99944080 () rs orientation: forward

Symbol	Name	Function Class
Gm11571	predicted gene 11571	within coordinates
Tssr104894	transcription start site region 104894	1139 bp downstream
Tssr104895	transcription start site region 104895	989 bp downstream
Tssr104896	transcription start site region 104896	962 bp downstream