rs27072645 SNP Detail

Summary

• ID
  rs27072645
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99943834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAGAGCTA GCCCACTTTC
  AAGTGGGCTA GCCTGGAGAG TGCAAAGCTG AGAAGGTAAC CGAGACATAC AAAATTGATG
  GCCAGAAAAA CAGACTTCCC TGCTGAGTAT CCTGTAAGGG GTAAACGAAG ACCAGCCCTG
  CAAGACCTGC AGACATAGGA CCACAGCTTC TGAGACCTCT GAACGATCAG CCTTGACCCA
  Y
  CGTGTCCAAA GAAGAGCATC GTCTCCATCA TCCAGCCCGG ATTTGTTTGT AGCTGAAACG
  CACTGTTGTT TGCCTCCAGA CGATGTAAAC TCCAAGAGCA GCAATGCCAT TTGTTCCTGA
  CCAAGTATGG AGAACCTGGA GATGAGATAG GGAAGGAGTG GGGACAGTCA ACCATAAAAT
  GCCATCTGTT TCTGATGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37285867	NES08555687	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	C	C	C	C	C		C	T	C	C		T
ss132717818	ENSMUSSNP4399019	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						C
ss323830629	CHEV_11_99914322	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27072645					SNP	C	C	T	T	T	C	C	C	C	C	C	T	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37285867	NES08555687	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99943834 () rs orientation: forward

Symbol	Name	Function Class
D11Dcr21	DNA Segment, Chr 11, Derry C. Roopenian 21	1987 bp distal
D11Mit123	DNA segment, Chr 11, Massachusetts Institute of Technology 123	1972 bp distal
Gm11571	predicted gene 11571	within coordinates
Tssr104894	transcription start site region 104894	893 bp downstream
Tssr104895	transcription start site region 104895	743 bp downstream
Tssr104896	transcription start site region 104896	716 bp downstream