rs27072646 SNP Detail

Summary

• ID
  rs27072646
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99943759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGAACACA GAGAAGAAAG
  GAACAAGAAG GAAACCTGTA AGGGAGCACC AAACTGTGCA GTGCTACGTG GGTCAGATAG
  AGCTAGCCCA CTTTCAAGTG GGCTAGCCTG GAGAGTGCAA AGCTGAGAAG GTAACCGAGA
  CATACAAAAT TGATGGCCAG AAAAACAGAC TTCCCTGCTG AGTATCCTGT AAGGGGTAAA
  S
  GAAGACCAGC CCTGCAAGAC CTGCAGACAT AGGACCACAG CTTCTGAGAC CTCTGAACGA
  TCAGCCTTGA CCCACCGTGT CCAAAGAAGA GCATCGTCTC CATCATCCAG CCCGGATTTG
  TTTGTAGCTG AAACGCACTG TTGTTTGCCT CCAGACGATG TAAACTCCAA GAGCAGCAAT
  GCCATTTGTT CCTGACCAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37285868	NES08555686	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27072646					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37285868	NES08555686	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99943759 () rs orientation: forward

Symbol	Name	Function Class
D11Dcr21	DNA Segment, Chr 11, Derry C. Roopenian 21	1912 bp distal
D11Mit123	DNA segment, Chr 11, Massachusetts Institute of Technology 123	1897 bp distal
Gm11571	predicted gene 11571	within coordinates
Tssr104894	transcription start site region 104894	818 bp downstream
Tssr104895	transcription start site region 104895	668 bp downstream
Tssr104896	transcription start site region 104896	641 bp downstream