rs27072648 SNP Detail

Summary

• ID
  rs27072648
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99943177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGACAGGTA CCACCCAGAC TTCCCAGAAG GACATCAGAC
  CAGCGCTGGT AGTCGGCAGC TCCTGTAACC TTCTGGGGTT TGGAATGATA TTCAAGGTGG
  S
  TACATCCAAA GATGAGAAGC CATGCATGAC TAAAGACAAG CATGAGCCTC TGACTTCCCA
  ATGCCTGTCA GACTGCTCCA AAGCACTGGC TTTCCAGCAA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37285870	NES08555684	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27072648					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37285870	NES08555684	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99943177 () rs orientation: forward

Symbol	Name	Function Class
D11Dcr21	DNA Segment, Chr 11, Derry C. Roopenian 21	1330 bp distal
D11Mit123	DNA segment, Chr 11, Massachusetts Institute of Technology 123	1315 bp distal
D11Mit123.3	DNA segment, Chr 11, Massachusetts Institute of Technology 123.3	1464 bp distal
Gm11571	predicted gene 11571	within coordinates
Krt31	keratin 31	1800 bp upstream
Tssr104894	transcription start site region 104894	236 bp downstream
Tssr104895	transcription start site region 104895	86 bp downstream
Tssr104896	transcription start site region 104896	59 bp downstream
Tssr110726	transcription start site region 110726	1794 bp upstream