rs27072650 SNP Detail

Summary

• ID
  rs27072650
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99942772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACATTATA TCATTGAATC
  CAAGGGCTTA GATGCTAGGA AAGAAAATAT TGAAATGCCC TGAAATCACA GGACTATTCT
  TTAGCAGGAG TGCCAAGCTA GAAATGGGTG GTGATGGAAG AGAACAGAAG ATCTGAGGAT
  GAGGTGGCCC AAGCTAGAGA TGTATAAAGG TTAGGTAATT ATAGGCACCA GCCGATACCA
  R
  CTGCACTCCA GTACATCACC CAAGCTCCTG TGGCTTTGGC TCGCAGCCAA AGCTTCTTCT
  TTACTGACAC CTCATTGGAG TCCCTCTCCC CAGTGAGCTT TCATGGTAGT CTTCATGTGG
  CTGGAGGCTC CGATAAAAGG TCCAGTGTCT GCAGTCCCCA AGACCATTAT CCCACACTTA
  TTATAAAACC ATTCAGTTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37285872	NES08555682	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	A		A	A	A	A		G	G	A	G		G
ss38660497	mCV22957191	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		A
ss132717814	ENSMUSSNP7134537	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							A
ss323830627	CHEV_11_99913260	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27072650					SNP	A	A	G	G	G	A	A	A	A	A	A	A	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37285872	NES08555682	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99942772 () rs orientation: forward

Symbol	Name	Function Class
D11Dcr21	DNA Segment, Chr 11, Derry C. Roopenian 21	925 bp distal
D11Mit123	DNA segment, Chr 11, Massachusetts Institute of Technology 123	910 bp distal
D11Mit123.3	DNA segment, Chr 11, Massachusetts Institute of Technology 123.3	1059 bp distal
Gm11571	predicted gene 11571	340 bp upstream
Krt31	keratin 31	1395 bp upstream
Tssr104894	transcription start site region 104894	158 bp upstream
Tssr104895	transcription start site region 104895	314 bp upstream
Tssr104896	transcription start site region 104896	335 bp upstream
Tssr110726	transcription start site region 110726	1389 bp upstream