rs27072651 SNP Detail

Summary

• ID
  rs27072651
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99942695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGGCATC CAAGCTCCAG
  CTTGGATGTG CATACAGATG TTCTAAGGAC CGAAGGTTCA AAAGCATGAA AGAGGGGCTA
  CATTATATCA TTGAATCCAA GGGCTTAGAT GCTAGGAAAG AAAATATTGA AATGCCCTGA
  AATCACAGGA CTATTCTTTA GCAGGAGTGC CAAGCTAGAA ATGGGTGGTG ATGGAAGAGA
  R
  CAGAAGATCT GAGGATGAGG TGGCCCAAGC TAGAGATGTA TAAAGGTTAG GTAATTATAG
  GCACCAGCCG ATACCAACTG CACTCCAGTA CATCACCCAA GCTCCTGTGG CTTTGGCTCG
  CAGCCAAAGC TTCTTCTTTA CTGACACCTC ATTGGAGTCC CTCTCCCCAG TGAGCTTTCA
  TGGTAGTCTT CATGTGGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37285873	NES08555681	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	A		A	A	A	A		G	G	A	G		G
ss38813076	mCV22957202	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		A
ss323830625	CHEV_11_99913183	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27072651					SNP	A	A	G	G	G	A	A	A	A	A	A	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37285873	NES08555681	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99942695 () rs orientation: forward

Symbol	Name	Function Class
D11Dcr21	DNA Segment, Chr 11, Derry C. Roopenian 21	848 bp distal
D11Mit123	DNA segment, Chr 11, Massachusetts Institute of Technology 123	833 bp distal
D11Mit123.3	DNA segment, Chr 11, Massachusetts Institute of Technology 123.3	982 bp distal
Gm11571	predicted gene 11571	417 bp upstream
Krt31	keratin 31	1318 bp upstream
Tssr104894	transcription start site region 104894	235 bp upstream
Tssr104895	transcription start site region 104895	391 bp upstream
Tssr104896	transcription start site region 104896	412 bp upstream
Tssr110726	transcription start site region 110726	1312 bp upstream