rs27072652 SNP Detail

Summary

• ID
  rs27072652
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99942626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTAGTTA AACGTTCTAC
  CCTTCTGTCT AGTTCTCCTA GTTCAATACA TGTAAACTCA GTGCTTTGCT CTGGGCATCC
  AAGCTCCAGC TTGGATGTGC ATACAGATGT TCTAAGGACC GAAGGTTCAA AAGCATGAAA
  GAGGGGCTAC ATTATATCAT TGAATCCAAG GGCTTAGATG CTAGGAAAGA AAATATTGAA
  R
  TGCCCTGAAA TCACAGGACT ATTCTTTAGC AGGAGTGCCA AGCTAGAAAT GGGTGGTGAT
  GGAAGAGAAC AGAAGATCTG AGGATGAGGT GGCCCAAGCT AGAGATGTAT AAAGGTTAGG
  TAATTATAGG CACCAGCCGA TACCAACTGC ACTCCAGTAC ATCACCCAAG CTCCTGTGGC
  TTTGGCTCGC AGCCAAAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37285874	NES08555680	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	A		A	A	A	A		G	G	A	G		G
ss38853420	mCV22957203	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		A
ss132717810	ENSMUSSNP896900	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							A
ss323830624	CHEV_11_99913114	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27072652					SNP	A	A	G	G	G	A	A	A	A	A	A	A	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37285874	NES08555680	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99942626 () rs orientation: forward

Symbol	Name	Function Class
D11Dcr21	DNA Segment, Chr 11, Derry C. Roopenian 21	779 bp distal
D11Mit123	DNA segment, Chr 11, Massachusetts Institute of Technology 123	764 bp distal
D11Mit123.3	DNA segment, Chr 11, Massachusetts Institute of Technology 123.3	913 bp distal
Gm11571	predicted gene 11571	486 bp upstream
Krt31	keratin 31	1249 bp upstream
Tssr104894	transcription start site region 104894	304 bp upstream
Tssr104895	transcription start site region 104895	460 bp upstream
Tssr104896	transcription start site region 104896	481 bp upstream
Tssr110726	transcription start site region 110726	1243 bp upstream