rs27072653 SNP Detail

Summary

• ID
  rs27072653
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99942497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCTTTAAC ATTAAAAATC GCTTTGAAAT TTCTAGTTAA
  ACGTTCTACC CTTCTGTCTA GTTCTCCTAG TTCAATACAT GTAAACTCAG TGCTTTGCTC
  W
  GGGCATCCAA GCTCCAGCTT GGATGTGCAT ACAGATGTTC TAAGGACCGA AGGTTCAAAA
  GCATGAAAGA GGGGCTACAT TATATCATTG AATCCAAGGG                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37285875	NES08555679	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27072653					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37285875	NES08555679	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99942497 () rs orientation: forward

Symbol	Name	Function Class
D11Dcr21	DNA Segment, Chr 11, Derry C. Roopenian 21	650 bp distal
D11Mit123	DNA segment, Chr 11, Massachusetts Institute of Technology 123	635 bp distal
D11Mit123.3	DNA segment, Chr 11, Massachusetts Institute of Technology 123.3	784 bp distal
Gm11571	predicted gene 11571	615 bp upstream
Krt31	keratin 31	1120 bp upstream
Tssr104894	transcription start site region 104894	433 bp upstream
Tssr104895	transcription start site region 104895	589 bp upstream
Tssr104896	transcription start site region 104896	610 bp upstream
Tssr110726	transcription start site region 110726	1114 bp upstream