rs27072657 SNP Detail

Summary

• ID
  rs27072657
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99941926 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AAATTGGTTG GTTGGTTGGT TGGTTGGTTG GTTGGTTGGT
  TGGTTGGTTG GAGAAAGAAG ATACATTCAG TTACAGCCAT CAGCTCTTGT TTCTTCTGAT
  GAAAGTAAAC TCTCTAAATG TTGTAGCCTT CCAGGCTTGA TCTAAGCCTT GGATGTGAAG
  K
  TTGGAGAGCT TTCTGTAGTT TACAGGACCA CATAATGACC TCTCTTATCA CTTAAGAGAC
  TGGTAGTGGC TTTGATGATA ACCTTGAGAA CAGAGAAGAT TCTGAGAGAA GAGACAGTTT
  TTAAAGAGTT ATAGCTTTTG GCTGATAGAT GGGTGTAGAT TCATTTAAGC TGTCTAGGAA
  AAGAACTGTG CAAGAAATAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37285879	NES08555743	PERLEGEN	MM_PANEL2	f	SNP	T	G	G	G	T	T	T	T	T	T		T	G	T	G		G
ss132717798	ENSMUSSNP261325	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						T
ss323830621	CHEV_11_99912414	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27072657					SNP	T	G	G	G	T	T	T	T	T	T	G	T	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37285879	NES08555743	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99941926 () rs orientation: forward

Symbol	Name	Function Class
D11Dcr21	DNA Segment, Chr 11, Derry C. Roopenian 21	79 bp distal
D11Mit123	DNA segment, Chr 11, Massachusetts Institute of Technology 123	64 bp distal
D11Mit123.3	DNA segment, Chr 11, Massachusetts Institute of Technology 123.3	213 bp distal
Gm11571	predicted gene 11571	1186 bp upstream
Krt31	keratin 31	549 bp upstream
Tssr104894	transcription start site region 104894	1004 bp upstream
Tssr104895	transcription start site region 104895	1160 bp upstream
Tssr104896	transcription start site region 104896	1181 bp upstream
Tssr110726	transcription start site region 110726	543 bp upstream