rs27072658 SNP Detail

Summary

• ID
  rs27072658
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99941213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGGGGGT CCTGCTGCTG
  GTTCCTCTCC TGGATCCTAC ATTCCAGCTC TGCATTCTCT CTCTCCAGCT GCCTCACCTT
  CTCCATATAG GAGGCCAGGC GGTCATTCAG GAACTGCATG GTCTCCTTCT CATTGCCATT
  GAAGGAGCCC TCACAGAACC AATTGCAGTT GCCCACATTG GCGGGGATGT TGCAGGCCCC
  R
  GGCAGGGTGC AGCCATGGCA GCTGGGGGGC ACACAGGGCC GGGAGGAGCA GCTGGTGCGG
  CAGCTCAGGG CCGGCAGGCA GCAATTGTAT GGCATGGTGC TGGAGGGAGG GAGAGAGGTA
  CCTGGCTGAA GACTCGGTGT GAATTCTCCA AGCCTCAGAG CTCTGAGTCT CCTTCCCTTG
  GTGAGACTTT ATAAGCCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37285881	NES08555740	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	A		A	A	A	A	G		G	G	G
ss38660513	mCV22957400	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		A
ss132717774	ENSMUSSNP1887054	ENSEMBL	ENSEMBL_Sanger	f	SNP			G							A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27072658					SNP	A	A	G	G	G	A	A	A	A	A	A	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37285881	NES08555740	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99941213 () rs orientation: forward

Symbol	Name	Function Class
D11Dcr21	DNA Segment, Chr 11, Derry C. Roopenian 21	490 bp proximal
D11Mit123	DNA segment, Chr 11, Massachusetts Institute of Technology 123	336 bp proximal
D11Mit123.3	DNA segment, Chr 11, Massachusetts Institute of Technology 123.3	272 bp proximal
Gm11571	predicted gene 11571	1899 bp upstream
Krt31	keratin 31	within coordinates
Tssr104894	transcription start site region 104894	1717 bp upstream
Tssr104895	transcription start site region 104895	1873 bp upstream
Tssr104896	transcription start site region 104896	1894 bp upstream
Tssr110726	transcription start site region 110726	155 bp downstream