rs27074461 SNP Detail

Summary

• ID
  rs27074461
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96437789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAGATTGG ACAGATAGAT
  CTGTAAAGAA CTGAAGGTGA ATTTACAGCT TATTTTACCC AGGACCGTCA GGAGGTCAGA
  GAAAGTTCTT CATGTCTTTG CTGAGTGAGA AACAAGTTAG AAACCTAAGC TCTGCAACAC
  TGTTGCGGAA CAGTGGAAAC CACAAAAACT AACCGATGAA ATCACTGCAT GCTTGCTTTA
  W
  AAGAAACTGC AAATTTGGTC AAGCAGCAAT GGTGGGCGTC TTCAGCCCCA TGCTTTTTTT
  TTTTTAAGCA CGTTTGGAAT GAAGAATGTT CTGGAGCTGG GTTTTACCGG TGTGGCTCTC
  AGCGTCTCTT AGCTTTAAAT TCTTCTGTTT TTATCTAAGT TCCGAATGCA AGTCACGTGA
  ACAACAGGCC CAGGGATTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37294884	NES08567796	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	T	T	T		T	T	A		T
ss132681611	ENSMUSSNP6513168	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss323821055	CHEV_11_96408277	CHEVERUD	SCREENING_POP	f	SNP											T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27074461					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37294884	NES08567796	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96437789 () rs orientation: forward

Symbol	Name	Function Class
Rr238060	regulatory region 238060	189 bp distal
Rr238061	regulatory region 238061	1412 bp proximal
Rr252639	regulatory region 252639	within coordinates
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104544	transcription start site region 104544	1568 bp downstream
Tssr104545	transcription start site region 104545	1530 bp downstream
Tssr104546	transcription start site region 104546	1514 bp downstream
Tssr104547	transcription start site region 104547	1482 bp downstream
Tssr104548	transcription start site region 104548	1382 bp downstream
Tssr104549	transcription start site region 104549	1365 bp downstream
Tssr104550	transcription start site region 104550	1314 bp downstream
Tssr104551	transcription start site region 104551	1274 bp downstream
Tssr104552	transcription start site region 104552	1266 bp downstream
Tssr104553	transcription start site region 104553	64 bp upstream