rs27074462 SNP Detail

Summary

• ID
  rs27074462
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96437774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCTAATT AGAGGAAGAG
  ATTGGACAGA TAGATCTGTA AAGAACTGAA GGTGAATTTA CAGCTTATTT TACCCAGGAC
  CGTCAGGAGG TCAGAGAAAG TTCTTCATGT CTTTGCTGAG TGAGAAACAA GTTAGAAACC
  TAAGCTCTGC AACACTGTTG CGGAACAGTG GAAACCACAA AAACTAACCG ATGAAATCAC
  Y
  GCATGCTTGC TTTATAAGAA ACTGCAAATT TGGTCAAGCA GCAATGGTGG GCGTCTTCAG
  CCCCATGCTT TTTTTTTTTT AAGCACGTTT GGAATGAAGA ATGTTCTGGA GCTGGGTTTT
  ACCGGTGTGG CTCTCAGCGT CTCTTAGCTT TAAATTCTTC TGTTTTTATC TAAGTTCCGA
  ATGCAAGTCA CGTGAACAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37294885	NES08567795	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	T	T	T	T	T		C	T	T		T
ss132681607	ENSMUSSNP245759	ENSEMBL	ENSEMBL_Sanger	f	SNP		C						T
ss323821054	CHEV_11_96408262	CHEVERUD	SCREENING_POP	f	SNP											C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27074462					SNP	T	C	C	C	T	T	T	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37294885	NES08567795	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96437774 () rs orientation: forward

Symbol	Name	Function Class
Rr238060	regulatory region 238060	174 bp distal
Rr238061	regulatory region 238061	1427 bp proximal
Rr252639	regulatory region 252639	within coordinates
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104544	transcription start site region 104544	1553 bp downstream
Tssr104545	transcription start site region 104545	1515 bp downstream
Tssr104546	transcription start site region 104546	1499 bp downstream
Tssr104547	transcription start site region 104547	1467 bp downstream
Tssr104548	transcription start site region 104548	1367 bp downstream
Tssr104549	transcription start site region 104549	1350 bp downstream
Tssr104550	transcription start site region 104550	1299 bp downstream
Tssr104551	transcription start site region 104551	1259 bp downstream
Tssr104552	transcription start site region 104552	1251 bp downstream
Tssr104553	transcription start site region 104553	79 bp upstream