rs27074465 SNP Detail

Summary

• ID
  rs27074465
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96437615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAAGAAC TGCCTTCGAC
  ACTCTTTCAA GGCTGGGTTA GGGAAACGCT TAGGCTATCA ACAGGGCACA GTGACTCCTT
  CTGGAAGAAA GAAAAAATAA AATTGTTTTA ACAGAAATTT TAAAACCTGC AATAACGAGT
  TATTTATTCT ACATGATTGT ATTCTAATTA GAGGAAGAGA TTGGACAGAT AGATCTGTAA
  R
  GAACTGAAGG TGAATTTACA GCTTATTTTA CCCAGGACCG TCAGGAGGTC AGAGAAAGTT
  CTTCATGTCT TTGCTGAGTG AGAAACAAGT TAGAAACCTA AGCTCTGCAA CACTGTTGCG
  GAACAGTGGA AACCACAAAA ACTAACCGAT GAAATCACTG CATGCTTGCT TTATAAGAAA
  CTGCAAATTT GGTCAAGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37294888	NES08567792	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27074465					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37294888	NES08567792	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96437615 () rs orientation: forward

Symbol	Name	Function Class
Rr238060	regulatory region 238060	15 bp distal
Rr238061	regulatory region 238061	1586 bp proximal
Rr252639	regulatory region 252639	within coordinates
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104544	transcription start site region 104544	1394 bp downstream
Tssr104545	transcription start site region 104545	1356 bp downstream
Tssr104546	transcription start site region 104546	1340 bp downstream
Tssr104547	transcription start site region 104547	1308 bp downstream
Tssr104548	transcription start site region 104548	1208 bp downstream
Tssr104549	transcription start site region 104549	1191 bp downstream
Tssr104550	transcription start site region 104550	1140 bp downstream
Tssr104551	transcription start site region 104551	1100 bp downstream
Tssr104552	transcription start site region 104552	1092 bp downstream
Tssr104553	transcription start site region 104553	238 bp upstream