rs27074467 SNP Detail

Summary

• ID
  rs27074467
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96437072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACAGGGA GAAACAGAAA
  GAGACAGAGA GATAAACAGA GACAGAGATA GACAGAGACA GAGAAACAGA CAGAGACAGA
  CAGCAACAGA GACAGAGAAA GGGGCAAGGG AGAGAGGGAA GGAGGGATGA CAGAAGGAAG
  GGAGAAAGGG ATAGATAGAG AACACCAGCT ATAGACTAAA CCATGCATAG AGTTGAGAGT
  K
  TATTGCTACC TGATTACAAT TCTGCTTTCC AGTGTGAATG CCCAGAATTC CTGGCAGGCT
  CTATCCTGTG GCGAGACACT CACAGAACAC AGCTCTGCCA CTGGGAAGGA GGACTTGCTA
  ACAGGGACTG ACATTTAGAT TTCTGAACTG AAAGCGTAGT TTCTTCCATT GGGAAGGGAA
  GAAAACGTTG CATATCGCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37294890	NES08567790	PERLEGEN	MM_PANEL2	f	SNP	G	T	T	T	G	G	T	G	G	G		T	T	G	T		G
ss323821045	CHEV_11_96407560	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27074467					SNP	G	T	T	T	G	G	T	G	G	G	T	T	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37294890	NES08567790	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96437072 () rs orientation: forward

Symbol	Name	Function Class
Rr238060	regulatory region 238060	129 bp proximal
Rr252639	regulatory region 252639	within coordinates
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104543	transcription start site region 104543	1523 bp downstream
Tssr104544	transcription start site region 104544	851 bp downstream
Tssr104545	transcription start site region 104545	813 bp downstream
Tssr104546	transcription start site region 104546	797 bp downstream
Tssr104547	transcription start site region 104547	765 bp downstream
Tssr104548	transcription start site region 104548	665 bp downstream
Tssr104549	transcription start site region 104549	648 bp downstream
Tssr104550	transcription start site region 104550	597 bp downstream
Tssr104551	transcription start site region 104551	557 bp downstream
Tssr104552	transcription start site region 104552	549 bp downstream
Tssr104553	transcription start site region 104553	781 bp upstream