rs27074468 SNP Detail

Summary

• ID
  rs27074468
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96436482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGACATTTA TTTTAAGCTT
  TTAGAATTTT ATCTGTACTA GAAGTCATCA AAATGTTTTA GCTTTGTTTT CTTCTACCCC
  TCAAGTCAGA ACAACATTCT TAACTTAGAA TTATTGAGGG ACACGCAGCC TGACTGGCTG
  CCCACAGCTT TACTGATAAG CAATAACCAT GATGCATGTC ATGTTTAGGT CATGCCTTGT
  R
  GAAACTACAA AGAGTCCTAG GAGAGCATGG AATTTTGCCC AGTTGCACAG GAGACAGAGA
  AAGGCAGAGA CAAAGAGACA GAGAGAGACA GAGAGAAGAG AAAGACAGAG ACATAGAGAG
  ACAGAGAAAC AGAGAGATAG ACAGAGAAAC AGAGAGACAA AGAGAGCAAG ACAGAGACAG
  ACAGAGATAG AGAAAGACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37294891	NES08567830	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	A	A	G	A	A	A		G	G	A		A
ss132681579	ENSMUSSNP2598976	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						A
ss323821039	CHEV_11_96406970	CHEVERUD	SCREENING_POP	f	SNP												G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27074468					SNP	A	A	G	G	G	A	A	G	A	A	A	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37294891	NES08567830	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96436482 () rs orientation: forward

Symbol	Name	Function Class
Rr238060	regulatory region 238060	719 bp proximal
Rr252638	regulatory region 252638	1883 bp distal
Rr252639	regulatory region 252639	120 bp proximal
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104543	transcription start site region 104543	933 bp downstream
Tssr104544	transcription start site region 104544	261 bp downstream
Tssr104545	transcription start site region 104545	223 bp downstream
Tssr104546	transcription start site region 104546	207 bp downstream
Tssr104547	transcription start site region 104547	175 bp downstream
Tssr104548	transcription start site region 104548	75 bp downstream
Tssr104549	transcription start site region 104549	58 bp downstream
Tssr104550	transcription start site region 104550	7 bp downstream
Tssr104551	transcription start site region 104551	13 bp upstream
Tssr104552	transcription start site region 104552	34 bp upstream
Tssr104553	transcription start site region 104553	1371 bp upstream