rs27074469 SNP Detail

Summary

• ID
  rs27074469
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:96436468 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAA CCATGATGCA TGTCATGTTT
  R
  GGTCATGCCT TGTAGAAACT ACAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37294892	NES08567829	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	G	A	A	G	A	A	A		A	G	A	G		A
ss323821038	CHEV_11_96406956	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27074469					SNP	A	A	A	G	A	A	G	A	A	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37294892	NES08567829	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96436468 () rs orientation: forward

Symbol	Name	Function Class
Rr455429	regulatory region 455429	1014 bp proximal
Skap1	src family associated phosphoprotein 1	Intron
Tssr104543	transcription start site region 104543	919 bp downstream
Tssr104544	transcription start site region 104544	247 bp downstream
Tssr104545	transcription start site region 104545	209 bp downstream
Tssr104546	transcription start site region 104546	193 bp downstream
Tssr104547	transcription start site region 104547	161 bp downstream
Tssr104548	transcription start site region 104548	61 bp downstream
Tssr104549	transcription start site region 104549	44 bp downstream
Tssr104550	transcription start site region 104550	within coordinates
Tssr104551	transcription start site region 104551	27 bp upstream
Tssr104552	transcription start site region 104552	48 bp upstream
Tssr104553	transcription start site region 104553	1385 bp upstream