rs27074470 SNP Detail

Summary

• ID
  rs27074470
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96436429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGACAGCA GCAGCCATAC
  TTTAGGAAGA AAATAGGTTT AACTTGTTCT GAAGTGACAT TTATTTTAAG CTTTTAGAAT
  TTTATCTGTA CTAGAAGTCA TCAAAATGTT TTAGCTTTGT TTTCTTCTAC CCCTCAAGTC
  AGAACAACAT TCTTAACTTA GAATTATTGA GGGACACGCA GCCTGACTGG CTGCCCACAG
  Y
  TTTACTGATA AGCAATAACC ATGATGCATG TCATGTTTAG GTCATGCCTT GTAGAAACTA
  CAAAGAGTCC TAGGAGAGCA TGGAATTTTG CCCAGTTGCA CAGGAGACAG AGAAAGGCAG
  AGACAAAGAG ACAGAGAGAG ACAGAGAGAA GAGAAAGACA GAGACATAGA GAGACAGAGA
  AACAGAGAGA TAGACAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37294893	NES08567828	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27074470					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37294893	NES08567828	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96436429 () rs orientation: forward

Symbol	Name	Function Class
Rr238060	regulatory region 238060	772 bp proximal
Rr252638	regulatory region 252638	1830 bp distal
Rr252639	regulatory region 252639	173 bp proximal
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104543	transcription start site region 104543	880 bp downstream
Tssr104544	transcription start site region 104544	208 bp downstream
Tssr104545	transcription start site region 104545	170 bp downstream
Tssr104546	transcription start site region 104546	154 bp downstream
Tssr104547	transcription start site region 104547	122 bp downstream
Tssr104548	transcription start site region 104548	22 bp downstream
Tssr104549	transcription start site region 104549	5 bp downstream
Tssr104550	transcription start site region 104550	38 bp upstream
Tssr104551	transcription start site region 104551	66 bp upstream
Tssr104552	transcription start site region 104552	87 bp upstream
Tssr104553	transcription start site region 104553	1424 bp upstream