rs27074473 SNP Detail

Summary

• ID
  rs27074473
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96436326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGAGGAT CGGGCTCCTG
  TCCTCATGCC TCACCGCCTC CCTCGGAGAC ACATGGTCAC TCAATACTAA ATAGACGCAA
  AGGCGGTGCC CCCCATTTGC TGGCAAGACA GCAGCAGCCA TACTTTAGGA AGAAAATAGG
  TTTAACTTGT TCTGAAGTGA CATTTATTTT AAGCTTTTAG AATTTTATCT GTACTAGAAG
  Y
  CATCAAAATG TTTTAGCTTT GTTTTCTTCT ACCCCTCAAG TCAGAACAAC ATTCTTAACT
  TAGAATTATT GAGGGACACG CAGCCTGACT GGCTGCCCAC AGCTTTACTG ATAAGCAATA
  ACCATGATGC ATGTCATGTT TAGGTCATGC CTTGTAGAAA CTACAAAGAG TCCTAGGAGA
  GCATGGAATT TTGCCCAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37294896	NES08567825	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	T	T	T	T		C	C	T	C		T
ss132681567	ENSMUSSNP3616064	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					T
ss323821035	CHEV_11_96406814	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27074473					SNP	T	T	C	C	C	T	T	T	T	T	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37294896	NES08567825	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96436326 () rs orientation: forward

Symbol	Name	Function Class
Rr238060	regulatory region 238060	875 bp proximal
Rr252638	regulatory region 252638	1727 bp distal
Rr252639	regulatory region 252639	276 bp proximal
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104543	transcription start site region 104543	777 bp downstream
Tssr104544	transcription start site region 104544	105 bp downstream
Tssr104545	transcription start site region 104545	67 bp downstream
Tssr104546	transcription start site region 104546	51 bp downstream
Tssr104547	transcription start site region 104547	19 bp downstream
Tssr104548	transcription start site region 104548	70 bp upstream
Tssr104549	transcription start site region 104549	83 bp upstream
Tssr104550	transcription start site region 104550	141 bp upstream
Tssr104551	transcription start site region 104551	169 bp upstream
Tssr104552	transcription start site region 104552	190 bp upstream
Tssr104553	transcription start site region 104553	1527 bp upstream