rs27074474 SNP Detail

Summary

• ID
  rs27074474
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96436304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCATGGGA AGGATAAGCC
  TTGTAAGAGG ATCGGGCTCC TGTCCTCATG CCTCACCGCC TCCCTCGGAG ACACATGGTC
  ACTCAATACT AAATAGACGC AAAGGCGGTG CCCCCCATTT GCTGGCAAGA CAGCAGCAGC
  CATACTTTAG GAAGAAAATA GGTTTAACTT GTTCTGAAGT GACATTTATT TTAAGCTTTT
  R
  GAATTTTATC TGTACTAGAA GTCATCAAAA TGTTTTAGCT TTGTTTTCTT CTACCCCTCA
  AGTCAGAACA ACATTCTTAA CTTAGAATTA TTGAGGGACA CGCAGCCTGA CTGGCTGCCC
  ACAGCTTTAC TGATAAGCAA TAACCATGAT GCATGTCATG TTTAGGTCAT GCCTTGTAGA
  AACTACAAAG AGTCCTAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37294897	NES08567824	PERLEGEN	MM_PANEL2	f	SNP			G	G	A			A	G		A
ss132681563	ENSMUSSNP4156887	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G				A
ss323821034	CHEV_11_96406792	CHEVERUD	SCREENING_POP	f	SNP							G			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27074474					SNP	A	G	G	G	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37294897	NES08567824	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96436304 () rs orientation: forward

Symbol	Name	Function Class
Rr238060	regulatory region 238060	897 bp proximal
Rr252638	regulatory region 252638	1705 bp distal
Rr252639	regulatory region 252639	298 bp proximal
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104543	transcription start site region 104543	755 bp downstream
Tssr104544	transcription start site region 104544	83 bp downstream
Tssr104545	transcription start site region 104545	45 bp downstream
Tssr104546	transcription start site region 104546	29 bp downstream
Tssr104547	transcription start site region 104547	within coordinates
Tssr104548	transcription start site region 104548	92 bp upstream
Tssr104549	transcription start site region 104549	105 bp upstream
Tssr104550	transcription start site region 104550	163 bp upstream
Tssr104551	transcription start site region 104551	191 bp upstream
Tssr104552	transcription start site region 104552	212 bp upstream
Tssr104553	transcription start site region 104553	1549 bp upstream