rs27074476 SNP Detail

Summary

• ID
  rs27074476
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96435841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAA TCTGTGTTAG AAACTTCACT
  M
  TAGCCCGACA TGATGTTTGC GTTTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37294899	NES08567822	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	A	A	A	C	A	A	A		C	A	A	A		A
ss132681543	ENSMUSSNP5229576	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C						A
ss323821027	CHEV_11_96406329	CHEVERUD	SCREENING_POP	f	SNP												C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27074476					SNP	A	A	C	C	A	A	A	C	A	A	A	C	C	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37294899	NES08567822	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96435841 () rs orientation: forward

Symbol	Name	Function Class
Rr238060	regulatory region 238060	1360 bp proximal
Rr252638	regulatory region 252638	1242 bp distal
Rr252639	regulatory region 252639	761 bp proximal
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104543	transcription start site region 104543	292 bp downstream
Tssr104544	transcription start site region 104544	358 bp upstream
Tssr104545	transcription start site region 104545	411 bp upstream
Tssr104546	transcription start site region 104546	419 bp upstream
Tssr104547	transcription start site region 104547	461 bp upstream
Tssr104548	transcription start site region 104548	555 bp upstream
Tssr104549	transcription start site region 104549	568 bp upstream
Tssr104550	transcription start site region 104550	626 bp upstream
Tssr104551	transcription start site region 104551	654 bp upstream
Tssr104552	transcription start site region 104552	675 bp upstream