rs27074477 SNP Detail

Summary

• ID
  rs27074477
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96435669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCTTCCT AAGGGCCCAA
  GTTTGGTTCT CAGCACCCAC ATTGACTGGC TAACAACTAC CTGTAATCCA GCTCCAGGGG
  ATCTGATGCT CTCCCCTGTC TCCCCAGGCA TCCCCACACT TGTGATATAT ACCCATACAT
  AAATATATAC ATACAACACA CACACATGCA CACATATGTC TACAAATAAA ATCAAATACT
  R
  AGTAAGAGTT TCCCAAAAGA GAAGTTAATT ATATTAGCAA TACTAAGCTC TTCCAAGATT
  TTCTGGTCTT TCACATCAGC ACATGAAAGG TAAAGCCACC CCCTCCCCAA AGTGACACAG
  TTAACAGCAG AGATAGGGAC AGATGCATGA ATCTGTGTTA GAAACTTCAC TATAGCCCGA
  CATGATGTTT GCGTTTCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37294900	NES08567821	PERLEGEN	MM_PANEL2	f	SNP			A	G	G	G		G	A		G
ss132681535	ENSMUSSNP2930676	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A				G
ss323821025	CHEV_11_96406157	CHEVERUD	SCREENING_POP	f	SNP							A			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27074477					SNP	G	A	A	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37294900	NES08567821	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96435669 () rs orientation: forward

Symbol	Name	Function Class
Rr238060	regulatory region 238060	1532 bp proximal
Rr252638	regulatory region 252638	1070 bp distal
Rr252639	regulatory region 252639	933 bp proximal
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104543	transcription start site region 104543	120 bp downstream
Tssr104544	transcription start site region 104544	530 bp upstream
Tssr104545	transcription start site region 104545	583 bp upstream
Tssr104546	transcription start site region 104546	591 bp upstream
Tssr104547	transcription start site region 104547	633 bp upstream
Tssr104548	transcription start site region 104548	727 bp upstream
Tssr104549	transcription start site region 104549	740 bp upstream
Tssr104550	transcription start site region 104550	798 bp upstream
Tssr104551	transcription start site region 104551	826 bp upstream
Tssr104552	transcription start site region 104552	847 bp upstream