rs27074478 SNP Detail

Summary

• ID
  rs27074478
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96435403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCATGCAC CCCCACATAA
  ATACAACGCT TTTTTTTGTG TTAAACATAG CTGAAATTTA AAAGTTTTGC ATTGGTGGAT
  CTGAGATTAT AGTTCATGGA AGAACACTTG CTTAGCTCCT GTGTGTGAAA CCAGGCATTG
  TATCCGCAAC ACTGAAAATA AAAATCATGT TAAAAGACGT ATACTTACAT GTGGAACATT
  Y
  CAATGTGGAA AACTGTTTCA TAAACACAGA AAGAGAGGCT GAGATGGCTC AGCAGTTAAG
  AGCACTGTTC TTCCTAAGGG CCCAAGTTTG GTTCTCAGCA CCCACATTGA CTGGCTAACA
  ACTACCTGTA ATCCAGCTCC AGGGGATCTG ATGCTCTCCC CTGTCTCCCC AGGCATCCCC
  ACACTTGTGA TATATACCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37294901	NES08567844	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27074478					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37294901	NES08567844	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96435403 () rs orientation: forward

Symbol	Name	Function Class
Rr238060	regulatory region 238060	1798 bp proximal
Rr252638	regulatory region 252638	804 bp distal
Rr252639	regulatory region 252639	1199 bp proximal
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104543	transcription start site region 104543	142 bp upstream
Tssr104544	transcription start site region 104544	796 bp upstream
Tssr104545	transcription start site region 104545	849 bp upstream
Tssr104546	transcription start site region 104546	857 bp upstream
Tssr104547	transcription start site region 104547	899 bp upstream
Tssr104548	transcription start site region 104548	993 bp upstream
Tssr104549	transcription start site region 104549	1006 bp upstream
Tssr104550	transcription start site region 104550	1064 bp upstream
Tssr104551	transcription start site region 104551	1092 bp upstream
Tssr104552	transcription start site region 104552	1113 bp upstream