rs27074479 SNP Detail

Summary

• ID
  rs27074479
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96435331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTCAACT GTGTGCACAT
  GTGCACACAC ACACACACAC GCACAAACAC ACACATACAC AAACACATGC ACAAGCATGC
  ACCCCCACAT AAATACAACG CTTTTTTTTG TGTTAAACAT AGCTGAAATT TAAAAGTTTT
  GCATTGGTGG ATCTGAGATT ATAGTTCATG GAAGAACACT TGCTTAGCTC CTGTGTGTGA
  R
  ACCAGGCATT GTATCCGCAA CACTGAAAAT AAAAATCATG TTAAAAGACG TATACTTACA
  TGTGGAACAT TCCAATGTGG AAAACTGTTT CATAAACACA GAAAGAGAGG CTGAGATGGC
  TCAGCAGTTA AGAGCACTGT TCTTCCTAAG GGCCCAAGTT TGGTTCTCAG CACCCACATT
  GACTGGCTAA CAACTACCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37294902	NES08567843	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	A	G	A	A	A		G	G	A	G		A
ss323821018	CHEV_11_96405819	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27074479					SNP	A	G	G	G	A	A	G	A	A	A	G	G	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37294902	NES08567843	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96435331 () rs orientation: forward

Symbol	Name	Function Class
Rr238060	regulatory region 238060	1870 bp proximal
Rr252638	regulatory region 252638	732 bp distal
Rr252639	regulatory region 252639	1271 bp proximal
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104543	transcription start site region 104543	214 bp upstream
Tssr104544	transcription start site region 104544	868 bp upstream
Tssr104545	transcription start site region 104545	921 bp upstream
Tssr104546	transcription start site region 104546	929 bp upstream
Tssr104547	transcription start site region 104547	971 bp upstream
Tssr104548	transcription start site region 104548	1065 bp upstream
Tssr104549	transcription start site region 104549	1078 bp upstream
Tssr104550	transcription start site region 104550	1136 bp upstream
Tssr104551	transcription start site region 104551	1164 bp upstream
Tssr104552	transcription start site region 104552	1185 bp upstream