rs27074480 SNP Detail

Summary

• ID
  rs27074480
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96434798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCATCTTA CAAATGAAAC
  CCTGGGACCT AGCAGAGGTA ACTCACCCCA TCCCACCACT GTTGGGTAGG GGGACCGTGA
  TTTGTACCTG TTGTGTTGGT TCCAGAAGCC CTGTTGCTAA CCTAGTTAGT GTTGTAACTC
  CTGCCCCATC TAAGTTATCC CTAAAGATGG AGCTGCCTTG TAGATATTTT GGCTCAGATG
  R
  TATAAGCAGT ACATTTAATG CTTAAAATAT TTTCATAAGC AACCGGGGGG TGAAGGGAAT
  GACTCACTTG GTAAAGTGTA TGCTGTGCAG ACATTAGGAC CTGAGTTTAG ACACCCAGCA
  CCTACATCAG GGAGCAATCC ATGCCTGTAA TTCCAGTGGT CAGGGTCGGG GAGGGGGAAC
  CAGGAAGATC CTGGGGCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss37294903	NES08567852	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	G	G	G	G		A	G		G
ss132681488	ENSMUSSNP7134135	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A					G
ss323821010	CHEV_11_96405286	CHEVERUD	SCREENING_POP	f	SNP											A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs27074480					SNP	G	G	A	A	A	G	G	G	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37294903	NES08567852	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96434798 () rs orientation: forward

Symbol	Name	Function Class
Rr252638	regulatory region 252638	199 bp distal
Rr252639	regulatory region 252639	1804 bp proximal
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104542	transcription start site region 104542	1538 bp downstream
Tssr104543	transcription start site region 104543	747 bp upstream
Tssr104544	transcription start site region 104544	1401 bp upstream
Tssr104545	transcription start site region 104545	1454 bp upstream
Tssr104546	transcription start site region 104546	1462 bp upstream
Tssr104547	transcription start site region 104547	1504 bp upstream
Tssr104548	transcription start site region 104548	1598 bp upstream
Tssr104549	transcription start site region 104549	1611 bp upstream
Tssr104550	transcription start site region 104550	1669 bp upstream
Tssr104551	transcription start site region 104551	1697 bp upstream
Tssr104552	transcription start site region 104552	1718 bp upstream