rs27074871 SNP Detail

Summary

• ID
  rs27074871
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:90694098 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAAAACA CTACTCTAGT
  GTCTTTCTAC AGGTGACTGT CATTCAGAGG ACAGTACTGA GAGGTGGCAG GAGGCCAGAT
  GGACTAATCT GATTGCAGGA TCAGGGCTTC GGGCTGGTCT CATGGGATCT TCTGAGAGGA
  AACTCTAATG AAAAATAGAT TAGATTTTTA CCAAGTGCAG CTTCAGGTGT CAAATGCTTA
  Y
  GGTTTGCCAT TTCCTATCCT CATTACAATT ACTGCCATAA GAATTGACCC ACATTACACA
  TTTTTTTTTA AGTTCCTCTT TGCAATTTTA GCAGGAAAAA GCAAAAAGGC CAAGGACCGC
  ATTAACTGCG CAGCTCAGGG AAACACTGAG GCTCTTTTTC TTGCCCAGGC AATCTGTGTG
  GGGAGAGCCT TGTAAAAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37309693	NES08588621	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27074871					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37309693	NES08588621	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:90694098 () rs orientation: forward

Symbol	Name	Function Class
4930405D11Rik	RIKEN cDNA 4930405D11 gene	1420 bp upstream
Rr237710	regulatory region 237710	1503 bp proximal
Rr253892	regulatory region 253892	74 bp distal
Tssr104130	transcription start site region 104130	1410 bp upstream