rs27074877 SNP Detail

Summary

• ID
  rs27074877
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:90693578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCTTGCTT TCCCACTTAA AGATTGGTCG TTGCTTTGGG
  GCGGTCACTG GTCACTGGAT GCATCTTTCC ATGTGAGAAG GAAGTGACCG CGCTGAGGCT
  Y
  GAATCTCTTC CTCTTTTTCA GAACCCACTG CTCTTACCGA ATATCTTTAA AGAGTGCTGG
  GCAAGGCTCA GCTGATAGCA AAGAGGCCTG TGTCTTAGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37309700	NES08588610	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	C	T	C		C	C	T		C
ss38856389	mCV24708671	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					T		C
ss132592449	ENSMUSSNP7245796	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							C
ss323796868	CHEV_11_90664066	CHEVERUD	SCREENING_POP	f	SNP													T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27074877					SNP	C	C	C	C	C	C	C	T	C	C	T	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37309700	NES08588610	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:90693578 () rs orientation: forward

Symbol	Name	Function Class
4930405D11Rik	RIKEN cDNA 4930405D11 gene	1940 bp upstream
Rr253892	regulatory region 253892	within coordinates
Tssr104130	transcription start site region 104130	1930 bp upstream