rs27076433 SNP Detail

Summary

• ID
  rs27076433
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:90078901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTGTATG ACTGCCGGGG
  CAAGGATCCC AGTAAGGAGT ATGCGCCGGA GAGCACACTG AATGCCCAGC CTTCCATCCG
  AGTGGTGGTA ACTCAGCACA GTGCTCATGC ATCCCACTGG GCAAGGGGAC CCAGCCTTCA
  CTTGAAGGAT CCTGCTCCGT TAGGGAAGAA AAGCACGGTG GTGTGAGACT GGGGAACGGA
  Y
  ACTGGGTAGA GACCAACAAA TGCAGCAGAA AACAACTGTC CCCACTGTGG CTCCTGTGCT
  CTCCAAATAC ATGGACATCC TGATTGGCTG AGGAAACAGA GGCTCTGTCT TACTATCTGC
  GCTCTGGTCA CTCTCCTTGT GAATAAAACA ACTGTTTAAG GTAAGACACT CTAAAGGCTC
  AGCACGCAAC ACTTGTTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37311759	NES08587122	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27076433					SNP	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37311759	NES08587122	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:90078901 () rs orientation: forward

Symbol	Name	Function Class
Gm45883	predicted gene 45883	33 bp upstream
Smim36	small integral membrane protein 36	within coordinates
Tssr104108	transcription start site region 104108	385 bp downstream
Tssr104109	transcription start site region 104109	368 bp downstream