rs27076434 SNP Detail

Summary

• ID
  rs27076434
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:90078852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGTCGCA AGCTACGTCA
  TCTTGCTCTT GGTGTTCCTC GTCTCCTGTG TGCTGTATGA CTGCCGGGGC AAGGATCCCA
  GTAAGGAGTA TGCGCCGGAG AGCACACTGA ATGCCCAGCC TTCCATCCGA GTGGTGGTAA
  CTCAGCACAG TGCTCATGCA TCCCACTGGG CAAGGGGACC CAGCCTTCAC TTGAAGGATC
  Y
  TGCTCCGTTA GGGAAGAAAA GCACGGTGGT GTGAGACTGG GGAACGGACA CTGGGTAGAG
  ACCAACAAAT GCAGCAGAAA ACAACTGTCC CCACTGTGGC TCCTGTGCTC TCCAAATACA
  TGGACATCCT GATTGGCTGA GGAAACAGAG GCTCTGTCTT ACTATCTGCG CTCTGGTCAC
  TCTCCTTGTG AATAAAACAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37311760	NES08587121	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27076434					SNP	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37311760	NES08587121	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:90078852 () rs orientation: forward

Symbol	Name	Function Class
Gm45883	predicted gene 45883	82 bp upstream
Smim36	small integral membrane protein 36	within coordinates
Tssr104108	transcription start site region 104108	336 bp downstream
Tssr104109	transcription start site region 104109	319 bp downstream