rs27076435 SNP Detail

Summary

• ID
  rs27076435
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:90077144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGCTCTT ATAGACAGAC
  ACACCCCTAG ATGAGCTCCA CTAATCAACT AGGTGATTCT AAATCCAGGC AAGTTAATAA
  TGAAGATTTG CTGTGACAGG GACCCAATAC AAATAATTTC AAAATGACAA CAACGGAGCT
  TTCTAGGAAG AGGCTTGAGC ATCTGTGTCA GTCATAAGGA AGAGAAGCCG GGTAATTATG
  K
  GACAGGACTT CAAGTGAGGT AGGAAAATTT ATAAATAAAG GAATAACTTA TTCTAGTCCA
  TATATAAATG TATTCCTAAC CTCTATCTTT TACATTTTAA GCCTTATTTT TAATTATATA
  TACATGTGTA TGCCTGTGTG TGAAAACGTA CACACAAGTA CACGTGCCCT CAAAGCCAGA
  GGCACTACAT CTCCCTGAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37311761	NES08587163	PERLEGEN	MM_PANEL2	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27076435					SNP	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37311761	NES08587163	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:90077144 () rs orientation: forward

Symbol	Name	Function Class
Gm45883	predicted gene 45883	1790 bp upstream
Gm56326	predicted gene, 56326	1191 bp upstream
Smim36	small integral membrane protein 36	1365 bp upstream
Tssr104108	transcription start site region 104108	1340 bp upstream
Tssr104109	transcription start site region 104109	1383 bp upstream