rs27077870 SNP Detail

Summary

• ID
  rs27077870
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:4915447 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAATGTTTA TCACCCAAGC
  ATATTTTGCA CACTTTTAAA GCAAAATTAT ATAAAATTTA ATGTCTAGGA TATATTCCTG
  GGTTTGGGTC CACTTTGAGA AATAAAACTA TAATAGTTTA AACTTTCATG TCTCTGTTTA
  CTAAGTGCTA ATTTTTGTTT GAAGTGCAGT CAGTAATTTG AAAAAAATCA GAAATGCATG
  Y
  TTCTCACTCG TGAGGCTAAT TCAACTTACC CAGGCAGCTG CAACAGCTGT AAACCTCACT
  GACCTCCATC CATCTTCTGC AAGTCCATCC AGCCCAGTGC GTCTGCTTCC AGTGTTTTAC
  ACCACTCGAG AGTCCCGAAA ACTCTGAAAA TGTAAGCATA AAAACATTCT TATGAAGAAA
  TTAAAACCAG AACAGGTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37323689	NES08840537	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27077870					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37323689	NES08840537	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:4915447 () rs orientation: forward

Symbol	Name	Function Class
Gm46728	predicted gene, 46728	within coordinates
Rr551127	regulatory region 551127	1257 bp distal
Sephs1	selenophosphate synthetase 1	79 bp downstream