rs27078343 SNP Detail

Summary

• ID
  rs27078343
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:4222126 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAATCAT ACTTGAATGA
  TACCCAGATA TTTTAAAAAA GAAGTATTTT CACATTCCTC CCTCTGGGTA TGTTTTTTTT
  TCTCTTATGT GTGGTTGATT TCCTGTGGGC TGGGTTCTGA ATTCTAGAAG GTAAAGCTTC
  AGGAAGGAGC TGTGACAAGT TGCCCGGTTT GAAATCTCCT GCGTACATAA TCACTGTAGC
  R
  GATATAATTG GAGCTAATTT CATATTTCCT GCATATCATA TTGGAAAATT GAGCTGTCAT
  ATCTATTTAA AGGCTACATG CCCAAGTGAG AACACCCAAG GCTTGTTTCT TTCAATACAT
  TTGTGCAGGA GGATTTCTTC TCTCATGAAC GTTGACTTGT ACTAGAAGCC AAATTTGTCT
  AGTTGAGTGC ACTTTGAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37325865	NES08837219	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27078343					SNP	A	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37325865	NES08837219	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:4222126 () rs orientation: forward

Symbol	Name	Function Class
Frmd4a	FERM domain containing 4A	within coordinates
Gm38348	predicted gene, 38348	within coordinates
Tssr15936	transcription start site region 15936	852 bp upstream