rs27078346 SNP Detail

Summary

• ID
  rs27078346
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:4220733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATCTTATT GAGAGCAATA
  GAAATTCAGA TCTAATATTT TATTTTTGTG AATATTAATA TATGGGGCGC CCATGTGAAG
  ATCTGGCATG ACCAGAGCCA CCACACTAAA TCCAGTGCTG TGTTGAGTCA TGTAAACTGA
  ACAGCCAAGG GTCAACAGTG GCTGAGTCCT AGCAATTTCC CACACTCCAG GCTCAGCATC
  Y
  TGACTTCTTG AACTTGGCCA TTGGTGACAG GAGTAGTCAG AGTAGTCTTG GCGACTTGTC
  TCCCTTACTT TCTTCCAGGT AGTCTGCATT TAGAGGGGAC CCTAAACACA GCCTGTGGAG
  CCTCTGAAGT GGGGGAGGGG TAGAAAGTTC TCTAAAGGTT CACTGTGTTT GAAAGCTCTC
  CATCATCAAA ACCCCCATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37325868	NES08837216	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27078346					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37325868	NES08837216	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:4220733 () rs orientation: forward

Symbol	Name	Function Class
Frmd4a	FERM domain containing 4A	within coordinates
Gm38348	predicted gene, 38348	1159 bp upstream