rs27078347 SNP Detail

Summary

• ID
  rs27078347
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:4220540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTTAGCC TACAGAGGGA
  GTTTCAGGCC ACTGAGGGAT CCTGTCTCAA CAAACAGGGG CTGGGGCAGT GCCTGAGAAA
  CAGAACAGTA GTCCAGGTTG TCAATATTTG CATTGGTACA GAGATTGAAC CTAGGACTTT
  TTCTATGCTT GGTAAGGACT CTTCCATTAG GCTGTATGTC CAGGCCCCAT TACATATCTT
  W
  TTGAGAGCAA TAGAAATTCA GATCTAATAT TTTATTTTTG TGAATATTAA TATATGGGGC
  GCCCATGTGA AGATCTGGCA TGACCAGAGC CACCACACTA AATCCAGTGC TGTGTTGAGT
  CATGTAAACT GAACAGCCAA GGGTCAACAG TGGCTGAGTC CTAGCAATTT CCCACACTCC
  AGGCTCAGCA TCTTGACTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37325869	NES08837215	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27078347					SNP	A	A	A	A	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37325869	NES08837215	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:4220540 () rs orientation: forward

Symbol	Name	Function Class
Frmd4a	FERM domain containing 4A	Intron
Gm38348	predicted gene, 38348	1352 bp upstream