rs27078350 SNP Detail

Summary

• ID
  rs27078350
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:4220058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACTCAGA CTTGCATAAC
  CCTAAGCAGC AAGGGACAGT TATAGAAGAG CCTCCCTCAC CCAACATGTA CAAGGGACAG
  AAGGGCATGT CAAACATACC ACCCAGGGAG CTGCACAGTG TATGAAGTCA TGGTGGCAAC
  TGACCTAGTC TGCTCAGCAA GTATACAGGG GAAAGGGAAG CGGCAGAAGA GACTCTACAC
  Y
  ACAAGGGCAC AGACGCGTCC TAGCCTGGCC TATGGTTACT CATGGCACTT ATCTGAATCT
  CGCTTAAACA AACAACTCTT AAAGGATGTA CCCTCAGTTG AGTCAGTTTA AGCACTACTT
  GACTGCATTA AGAAATTACC ATCTAGTTAC ATGAAAAGTG TTATACTTAT TTTCTTTACA
  TTCTTATATT TGAAATTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37325872	NES08837242	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27078350					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37325872	NES08837242	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:4220058 () rs orientation: forward

Symbol	Name	Function Class
Frmd4a	FERM domain containing 4A	within coordinates
Gm38348	predicted gene, 38348	1834 bp upstream