rs27079467 SNP Detail

Summary

• ID
  rs27079467
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:6355988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAGAGGAG AATGTACCAT
  CTATCCCTTC AGGGCTGTGG AAGGAAGACT ATTGGAGGGG GCAGACCTTT CAGGGCTGGC
  TGGGCAAGCT ACTCAGGGGT AAAATGTCTG CTCAATCATT TCTTGGCCTT GGGTTTGATC
  TCCAAGAGGG AGGGAGGGAA GGTTGGCTAG TGTTCATCTT TGTTTCCAGA AGAAGGCGCT
  R
  GGTATTCCAT GCCTATTATC TGTCCAAAAC TGCCCTGGGG AATGAGGTGC TAGGTAGAGG
  GAGTTGATTT CATTTGTTTC TATCTAGTCT TGGAAGGGAT TTACTTAAAA GGCCACATTT
  AATTAAAGGT GCTTTGACCT TTCTGAATGT ATCAGCCTCC AACTCCCCCT ACTTCCTATT
  GACGACCTTC TAGCCTGGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37318789	NES08821839	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27079467					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37318789	NES08821839	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:6355988 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11177	CpG island 11177			1639 bp proximal
Rr551374	regulatory region 551374			1453 bp distal
Rr551375	regulatory region 551375			605 bp distal
Rr551376	regulatory region 551376			331 bp proximal
Rr551377	regulatory region 551377			1267 bp proximal
Usp6nl	USP6 N-terminal like			Intron
				Noncoding-Transcript-Variant