rs27079669 SNP Detail

Summary

• ID
  rs27079669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:4564908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTTGGAG GGAAAAGTCT
  GCAGAGCTGA GAACTGTCTT GGAGAATTCA ACAAAGGCTC GAGCCAAAGG GGAGCAAACT
  TTAAAGAGAA CTTGTTTTGT GTCTGTTAAG GAACCTGCTG AAAAAATCCA CACCTATTGG
  TGTGTGTGTT TCGAGCACTA GTAGTAGGCG GGCTACCGGG AGGAAGCACG GACAACTGTA
  Y
  GGTCTCTGCC TTGATAAGGA AACTCTCAGC TGTTGAAAGG TTAATCAGAG AAGAAGGGAC
  AGCGTGACCA GGGAACTTAC TACTCCTGAA TTTAAACTAC GTTGTTTTCC ATCCAGATAT
  TTCAATGGAG ACAGTTGGAG AATCTGTATT TCAGGGAAAA GAAGTTTTCC GTGGAAGTTC
  ATGACCCTCG CAGGTAAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37324690	NES08831877	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27079669					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37324690	NES08831877	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:4564908 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11157	CpG island 11157	53 bp distal
D2Mit426	DNA Segment, Chr 2, Massachusetts Institute of Technology 426	1827 bp proximal
Frmd4a	FERM domain containing 4A	within coordinates
Rr367095	regulatory region 367095	282 bp downstream
Rr551084	regulatory region 551084	1938 bp distal
Rr551085	regulatory region 551085	331 bp distal
Tssr15962	transcription start site region 15962	468 bp downstream
Tssr15963	transcription start site region 15963	441 bp downstream
Tssr15964	transcription start site region 15964	391 bp downstream
Tssr15965	transcription start site region 15965	342 bp downstream
Tssr15966	transcription start site region 15966	287 bp downstream
Tssr15967	transcription start site region 15967	205 bp downstream
Tssr15968	transcription start site region 15968	167 bp downstream
Tssr15969	transcription start site region 15969	154 bp downstream
Tssr15970	transcription start site region 15970	34 bp downstream
Tssr15971	transcription start site region 15971	21 bp upstream
Tssr22384	transcription start site region 22384	403 bp upstream