rs27079672 SNP Detail

Summary

• ID
  rs27079672
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:4564333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCGCGTGA ATAAAATAAA
  TGCAAACTCC GGTACACAGA GCTTTAGCCC CTGGTGACGG TCCCCAGACC GCTAAGTAAC
  TTTCACTTTC ATCCAGAAAA AGCCACCCGC TTCCTTGCTC CTAGGAAGCG GCTCTAATTG
  CCTCCCGACT CCTCAAGATC AGCTTCTTTG ACTCCTGGGG TTCCCTTGTC CTGACTCTGT
  R
  TCCCCACAGG ACAGAACTCT TGCCCCCACC CACTCCGCTC CGCCCACCAC GCCTTTGTGC
  TGAGAAAGGA AAAAAAAAAG AATTACAAAC ACGCACTGTG ATCATGACTC GCCTGCCCCC
  AACTATGGTC GCACAGCCTC CGCCCTCCAG CGAGTGAGGA TGTCTGAGGC TCTTACACAT
  TAACGGCAGG AAGTGGAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37324693	NES08831874	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27079672					SNP	G	G	A	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37324693	NES08831874	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:4564333 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11157	CpG island 11157	18 bp proximal
Frmd4a	FERM domain containing 4A	within coordinates
Rr1275	regulatory region 1275	1647 bp downstream
Rr367095	regulatory region 367095	184 bp upstream
Rr551084	regulatory region 551084	1363 bp distal
Rr551085	regulatory region 551085	within coordinates
Tssr15962	transcription start site region 15962	80 bp upstream
Tssr15963	transcription start site region 15963	123 bp upstream
Tssr15964	transcription start site region 15964	179 bp upstream
Tssr15965	transcription start site region 15965	220 bp upstream
Tssr15966	transcription start site region 15966	237 bp upstream
Tssr15967	transcription start site region 15967	356 bp upstream
Tssr15968	transcription start site region 15968	391 bp upstream
Tssr15969	transcription start site region 15969	409 bp upstream
Tssr15970	transcription start site region 15970	528 bp upstream
Tssr15971	transcription start site region 15971	596 bp upstream
Tssr22384	transcription start site region 22384	149 bp downstream